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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
76
ATAC-seq
57
total RNA-seq
21
ChIP-seq
6
snATAC-seq
2
Capture-C
2
Hi-C
1
RNA microarray
Assay category
163
Transcription
82
DNA accessibility
21
DNA binding
2
3D chromatin structure
Target of assay
14
histone
14
histone modification
7
broad histone mark
7
control
7
narrow histone mark
Date released
571
February, 2021
352
August, 2017
271
August, 2021
250
October, 2019
193
May, 2020
172
May, 2021
163
June, 2019
120
July, 2018
115
May, 2019
111
February, 2023
91
December, 2017
82
November, 2017
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
48
March, 2020
47
September, 2023
45
November, 2019
40
May, 2024
39
February, 2018
26
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
January, 2018
6
September, 2017
5
December, 2019
5
March, 2019
4
November, 2020
1
August, 2018
1
August, 2022
Available data
106
tsv
89
bed narrowPeak
64
xls
57
txt
37
bam
22
bigWig
20
tagAlign
2
bed bed3+
1
bedpe bed3+
1
hic
Organism
270
Homo sapiens
Biosample type
229
tissue
44
cell line
42
in vitro differentiated cells
4
primary cell
Organ
128
kidney
92
heart
6
blood vessel
6
vasculature
5
connective tissue
2
artery
2
pancreas
1
adipose tissue
Project
271
AMP
Genome assembly (visualization)
94
GRCh38
34
hg19
Lab
137
AMP-T2D consortium
128
Katalin Susztak, Upenn
4
Struan F.A. Grant, CHOP
2
Bing Ren, UCSD
month_released!
April, 2019
BIOSAMPLE
ASSAY
271 results
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Clear Filters
single cell RNA-seq
ATAC-seq
total RNA-seq
ChIP-seq
snATAC-seq
Capture-C
Hi-C
RNA microarray
tissue
kidney
8
64
49
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
aorta
4
aortic valve
4
pulmonary valve
4
tricuspid valve
4
mitral valve
3
cardiac atrium
2
cardiac ventricle
2
interventricular septum
2
islet of Langerhans
1
1
pulmonary artery
2
subcutaneous adipose tissue
1
in vitro differentiated cells
neural progenitor cell
10
7
21
adipocyte
1
1
osteoblast
1
1
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