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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
38
ChIP-seq
37
ATAC-seq
26
total RNA-seq
3
single cell RNA-seq
2
Hi-C
Assay category
38
DNA binding
37
DNA accessibility
29
Transcription
2
3D chromatin structure
Target of assay
17
histone
17
histone modification
15
transcription factor
10
broad histone mark
7
RNA binding protein
7
narrow histone mark
6
chromatin remodeller
6
control
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
89
bam
58
bed narrowPeak
57
bigWig
30
fastq
25
tsv
21
bigBed narrowPeak
2
bedpe bed3+
2
hic
Organism
106
Homo sapiens
Biosample type
62
tissue
39
cell line
5
in vitro differentiated cells
Organ
55
pancreas
18
blood
18
bodily fluid
16
epithelium
14
kidney
7
spleen
5
liver
2
adipose tissue
2
connective tissue
Project
106
AMP
Genome assembly (visualization)
95
GRCh38
86
hg19
Lab
92
AMP-T2D consortium
14
Katalin Susztak, Upenn
Audit category:
22
inconsistent ontology term
month_released!
April, 2019
BIOSAMPLE
ASSAY
106 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
single cell RNA-seq
Hi-C
tissue
islet of Langerhans
19
19
1
kidney
11
3
spleen
7
adipose tissue
1
adipose tissue(adipose white tissue)
1
cell line
GM12878
18
EndoC_BH1
13
1
1
1
HepG2
5
in vitro differentiated cells
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
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