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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
69
total RNA-seq
47
ATAC-seq
32
ChIP-seq
27
DNase-seq
8
WGBS
3
Hi-C
3
pCHi-C
1
RRBS
1
small RNA-seq
Assay category
163
Transcription
74
DNA accessibility
32
DNA binding
9
DNA methylation
3
3D chromatin structure
Target of assay
18
histone
18
histone modification
10
broad histone mark
8
control
8
narrow histone mark
6
transcription factor
2
RNA binding protein
Date released
92
August, 2021
66
February, 2021
April, 2019
36
February, 2023
27
June, 2019
22
July, 2019
21
May, 2019
8
October, 2019
7
March, 2020
3
February, 2020
2
May, 2021
Available data
165
tsv
144
bam
128
bigWig
98
bed narrowPeak
42
bigBed narrowPeak
27
bed bed3+
27
bed broadPeak
27
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
6
tagAlign
3
bedpe bed3+
3
hic
Organism
284
Homo sapiens
Biosample type
216
tissue
66
cell line
2
primary cell
Organ
946
pancreas
791
liver
connective tissue
524
epithelium
491
adipose tissue
331
kidney
296
heart
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
284
AMP
Genome assembly (visualization)
171
GRCh38
132
hg19
Lab
284
AMP-T2D consortium
month_released!
April, 2019
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
284 results
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single cell RNA-seq
total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
WGBS
Hi-C
pCHi-C
RRBS
small RNA-seq
tissue
coronary artery
1
36
5
2
heart left ventricle
18
3
2
3
4
1
1
1
heart
1
4
5
18
1
1
1
right cardiac atrium
18
6
1
1
heart right ventricle
17
1
1
2
1
1
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cell line
smooth muscle cell of the coronary artery
52
8
6
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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