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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
48
ChIP-seq
36
DNase-seq
7
ATAC-seq
6
Hi-C
2
total RNA-seq
1
FAIRE-seq
1
WGBS
Assay category
48
DNA binding
44
DNA accessibility
6
3D chromatin structure
2
Transcription
1
DNA methylation
Target of assay
40
histone
40
histone modification
27
broad histone mark
13
narrow histone mark
8
control
Date released
48
October, 2019
32
June, 2019
7
May, 2019
6
February, 2021
5
July, 2019
2
February, 2020
1
March, 2020
Available data
92
bam
78
bed narrowPeak
75
bigWig
71
bigBed narrowPeak
38
bed broadPeak
38
bigBed broadPeak
36
bed bed3+
2
hic
2
tsv
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
tar
Organism
101
Homo sapiens
Biosample type
79
tissue
22
primary cell
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
336
heart
331
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
101
AMP
Genome assembly (visualization)
82
hg19
77
GRCh38
Lab
101
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
month_released!
April, 2019
organ_slims!
nerve
BIOSAMPLE
ASSAY
101 results
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ChIP-seq
DNase-seq
ATAC-seq
Hi-C
total RNA-seq
FAIRE-seq
WGBS
tissue
tibial artery
23
2
1
1
muscle of leg
7
13
1
muscle of arm
17
gastrocnemius medialis
4
1
distal epiphysis of femur
1
+ See 8 more…
primary cell
endothelial cell of umbilical vein
17
2
2
1
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