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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
381
ChIP-seq
207
DNase-seq
27
ATAC-seq
5
FAIRE-seq
Assay category
381
DNA binding
239
DNA accessibility
Target of assay
312
histone
312
histone modification
195
broad histone mark
117
narrow histone mark
72
transcription factor
29
RNA binding protein
4
chromatin remodeller
other context
3
other post-translational modification
Date released
210
June, 2019
97
May, 2019
April, 2019
63
November, 2017
62
October, 2019
50
December, 2017
45
October, 2018
42
August, 2017
14
November, 2018
14
September, 2018
6
January, 2019
6
October, 2017
5
September, 2017
3
December, 2018
2
July, 2019
1
November, 2020
Available data
2728
bam
2579
bigWig
1481
tsv
1345
bed narrowPeak
928
fastq
620
bigBed narrowPeak
378
tagAlign
270
bed bed3+
263
bed broadPeak
226
bigBed broadPeak
160
txt
153
zippedFastqFolder
64
xls
35
bed bedMethyl
35
bigBed bedMethyl
21
bedpe bed3+
21
hic
11
bed bed3
8
csv
7
bed bedgraph
4
hdf5
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
tar
Organism
614
Homo sapiens
Biosample type
494
tissue
cell line
109
primary cell
17
in vitro differentiated cells
Organ
127
brain
85
kidney
84
limb
84
pancreas
83
vasculature
79
blood vessel
75
epithelium
65
liver
48
heart
47
musculature of body
28
connective tissue
26
nerve
25
artery
18
ureter
13
vein
10
adipose tissue
10
spleen
6
eye
Project
620
AMP
Genome assembly (visualization)
608
GRCh38
545
hg19
Lab
620
AMP-T2D consortium
Audit category:
27
inconsistent control
24
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
7
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
month_released!
April, 2019
target.investigated_as!
other context
biosample_type!
cell line
BIOSAMPLE
ASSAY
620 results
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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
tissue
liver
38
2
body of pancreas
26
4
tibial nerve
24
2
brain
6
14
tibial artery
18
2
+ See 53 more…
primary cell
skeletal muscle myoblast
14
2
endothelial cell of umbilical vein
10
2
1
pancreatic beta cell
7
skeletal muscle satellite cell
7
cardiac fibroblast
3
3
+ See 24 more…
in vitro differentiated cells
hepatocyte
14
adipocyte
1
2
See all biosamples
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