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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
675
ChIP-seq
180
DNase-seq
5
ATAC-seq
4
FAIRE-seq
Assay category
675
DNA binding
189
DNA accessibility
Target of assay
390
transcription factor
285
histone
285
histone modification
184
broad histone mark
101
narrow histone mark
81
recombinant protein
80
RNA binding protein
33
chromatin remodeller
other context
5
other post-translational modification
Date released
304
November, 2017
163
June, 2019
93
May, 2019
70
November, 2018
April, 2019
57
October, 2019
50
December, 2017
45
October, 2018
30
December, 2018
23
August, 2017
21
January, 2019
6
October, 2017
2
July, 2019
Available data
2699
bam
2486
bigWig
1452
bed narrowPeak
1330
tsv
944
fastq
864
bigBed narrowPeak
298
tagAlign
272
bed broadPeak
236
bed bed3+
235
bigBed broadPeak
161
txt
64
xls
26
bed bedMethyl
26
bigBed bedMethyl
19
bedpe bed3+
17
hic
11
bed bed3
7
bed bedgraph
6
csv
3
tar
2
ibed
1
bedpe
1
hdf5
1
tagAlign bed3+
1
vcf
Organism
858
Homo sapiens
Biosample type
494
tissue
353
cell line
primary cell
17
in vitro differentiated cells
Organ
354
liver
116
brain
84
limb
70
kidney
69
pancreas
62
blood vessel
62
vasculature
54
blood
54
bodily fluid
42
heart
38
musculature of body
26
nerve
25
artery
18
ureter
15
epithelium
13
connective tissue
10
adipose tissue
10
spleen
3
eye
Project
864
AMP
Genome assembly (visualization)
824
GRCh38
792
hg19
Lab
864
AMP-T2D consortium
Audit category:
28
inconsistent control
1
inconsistent ontology term
Audit category:
15
missing controlled_by
Audit category:
30
inconsistent control read length
8
inconsistent control run_type
1
inconsistent assembly
month_released!
April, 2019
target.investigated_as!
other context
biosample_type!
primary cell
BIOSAMPLE
ASSAY
864 results
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ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
tissue
liver
38
2
body of pancreas
26
4
tibial nerve
24
2
brain
6
14
tibial artery
18
2
+ See 53 more…
cell line
HepG2
291
GM12878
54
Panc1
6
1
glomerular visceral epithelial cell
1
in vitro differentiated cells
hepatocyte
14
adipocyte
1
2
See all biosamples
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