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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
125
ChIP-seq
Assay category
125
DNA binding
Target of assay
957
histone modification
956
histone
508
transcription factor
491
narrow histone mark
464
broad histone mark
329
control
110
RNA binding protein
89
recombinant protein
36
chromatin remodeller
5
nucleotide modification
5
other context
5
other post-translational modification
Date released
81
November, 2017
23
November, 2018
7
October, 2019
6
January, 2019
3
August, 2017
3
December, 2017
2
December, 2018
Available data
125
bam
124
bed narrowPeak
124
bigWig
118
fastq
115
bigBed narrowPeak
5
bed broadPeak
5
bigBed broadPeak
Organism
125
Homo sapiens
Biosample type
119
cell line
3
in vitro differentiated cells
2
tissue
1
primary cell
Organ
105
liver
10
blood
10
bodily fluid
7
kidney
2
connective tissue
1
epithelium
Project
125
AMP
Genome assembly (visualization)
122
GRCh38
121
hg19
Lab
125
AMP-T2D consortium
Audit category:
7
inconsistent ontology term
3
inconsistent control
Audit category:
7
missing controlled_by
Audit category:
14
inconsistent control read length
8
inconsistent control run_type
month_released!
April, 2019
BIOSAMPLE
ASSAY
125 results
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ChIP-seq
cell line
HepG2
102
GM12878
10
RCC 7860 HIF1a re-expression
3
RCC 7860 HIF2a over-expression
2
RCC 7860 vector
2
in vitro differentiated cells
adipocyte
2
hepatocyte
1
tissue
liver
2
primary cell
skeletal muscle myoblast
1
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