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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
59
total RNA-seq
13
single cell RNA-seq
3
ATAC-seq
1
snATAC-seq
Assay category
72
Transcription
4
DNA accessibility
Date released
89
February, 2021
57
August, 2021
7
February, 2023
7
May, 2022
Available data
2735
bam
2573
bigWig
1481
tsv
1377
bed narrowPeak
855
fastq
684
bigBed narrowPeak
374
tagAlign
261
bed broadPeak
256
bed bed3+
226
bigBed broadPeak
160
txt
153
zippedFastqFolder
64
xls
35
bed bedMethyl
35
bigBed bedMethyl
21
bedpe bed3+
21
hic
11
bed bed3
8
csv
7
bed bedgraph
4
hdf5
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
tar
Organism
160
Homo sapiens
Biosample type
157
tissue
3
in vitro differentiated cells
cell line
Organ
88
bone element
62
kidney
6
pancreas
4
skeleton
1
musculature of body
Project
160
AMP
Genome assembly (visualization)
4
hg19
Lab
94
AMP-T2D consortium
57
Katalin Susztak, Upenn
6
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
85
inconsistent ontology term
6
audit script error
month_released!
April, 2020
audit.NOT_COMPLIANT.category!
missing controlled_by
biosample_type!
cell line
BIOSAMPLE
ASSAY
160 results
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RNA microarray
total RNA-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
tissue
bone element
84
kidney
49
13
islet of Langerhans
6
acetabular part of hip bone
1
ilium
1
+ See 3 more…
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
See all biosamples
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