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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
214
ChIP-seq
84
RNA microarray
79
total RNA-seq
32
DNase-seq
16
ATAC-seq
4
small RNA-seq
3
Hi-C
3
pCHi-C
3
single cell RNA-seq
2
RRBS
1
FAIRE-seq
Assay category
214
DNA binding
86
Transcription
49
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
183
histone
183
histone modification
116
narrow histone mark
67
broad histone mark
31
control
3
RNA binding protein
3
transcription factor
Date released
150
February, 2021
91
November, 2017
86
October, 2019
30
June, 2019
28
May, 2019
18
July, 2019
12
February, 2020
12
October, 2017
9
February, 2023
2
March, 2020
2
November, 2018
1
May, 2021
Available data
306
bam
277
bigWig
208
bed narrowPeak
124
bigBed narrowPeak
114
tagAlign
88
txt
84
tsv
45
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
17
fastq
5
bed bed3
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
tagAlign bed3+
Organism
441
Homo sapiens
Biosample type
419
tissue
22
primary cell
Organ
892
pancreas
778
liver
667
connective tissue
503
epithelium
479
adipose tissue
393
heart
354
kidney
282
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
36
embryo
25
spleen
22
vein
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
440
AMP
1
T1D
Genome assembly (visualization)
280
GRCh38
231
hg19
Lab
440
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
87
inconsistent ontology term
Audit category:
missing controlled_by
month_released!
April, 2020
audit.NOT_COMPLIANT.category!
missing controlled_by
BIOSAMPLE
ASSAY
441 results
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ChIP-seq
RNA microarray
total RNA-seq
DNase-seq
ATAC-seq
small RNA-seq
Hi-C
pCHi-C
single cell RNA-seq
RRBS
FAIRE-seq
tissue
bone element
84
bone tissue
58
brain
16
1
14
1
1
layer of hippocampus
23
caudate nucleus
15
1
1
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primary cell
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
brain pericyte
1
1
cerebellar granule cell
2
+ See 3 more…
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