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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
359
ChIP-seq
Assay category
359
DNA binding
Target of assay
235
transcription factor
87
histone
87
histone modification
71
control
66
recombinant protein
50
broad histone mark
narrow histone mark
35
RNA binding protein
11
chromatin remodeller
2
other context
2
other post-translational modification
Date released
715
February, 2021
359
November, 2017
335
May, 2021
314
May, 2020
308
August, 2021
295
August, 2017
207
June, 2019
205
February, 2023
200
May, 2022
173
October, 2019
168
July, 2018
108
July, 2019
86
May, 2019
85
November, 2018
78
December, 2017
65
October, 2018
61
March, 2020
59
September, 2020
57
April, 2019
57
November, 2019
49
April, 2018
47
September, 2023
41
September, 2018
35
December, 2018
31
February, 2018
27
January, 2019
25
February, 2020
25
May, 2024
April, 2020
18
October, 2017
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
354
bam
305
fastq
295
bigWig
275
bed narrowPeak
275
bigBed narrowPeak
57
bed broadPeak
55
bigBed broadPeak
52
tagAlign
3
tar
Organism
359
Homo sapiens
Biosample type
299
cell line
54
tissue
6
primary cell
Organ
299
liver
60
brain
4
epithelium
4
vasculature
2
blood vessel
Project
359
AMP
Genome assembly (visualization)
258
hg19
250
GRCh38
Lab
359
AMP-T2D consortium
Audit category:
missing controlled_by
Audit category:
13
inconsistent control read length
month_released!
April, 2020
audit.NOT_COMPLIANT.category!
missing controlled_by
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
359 results
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Clear Filters
ChIP-seq
cell line
HepG2
299
tissue
layer of hippocampus
15
caudate nucleus
10
substantia nigra
10
cingulate gyrus
9
middle frontal area 46
9
+ See 1 more…
primary cell
astrocyte of the cerebellum
2
brain microvascular endothelial cell
2
choroid plexus epithelial cell
2
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