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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
204
ChIP-seq
24
total RNA-seq
20
ATAC-seq
5
DNase-seq
4
Hi-C
4
pCHi-C
Assay category
204
DNA binding
25
DNA accessibility
24
Transcription
4
3D chromatin structure
Target of assay
173
histone
173
histone modification
130
narrow histone mark
43
broad histone mark
31
control
Date released
659
February, 2021
397
November, 2017
352
August, 2017
261
October, 2019
194
May, 2020
193
May, 2021
185
August, 2021
120
July, 2018
117
February, 2023
115
May, 2019
95
June, 2019
94
December, 2017
87
November, 2018
74
October, 2018
73
July, 2019
66
May, 2022
61
March, 2020
61
November, 2019
57
April, 2019
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
April, 2020
10
November, 2020
8
January, 2018
8
January, 2021
6
April, 2018
6
September, 2017
5
March, 2019
4
March, 2023
2
December, 2019
1
August, 2018
1
August, 2022
1
May, 2023
1
October, 2022
Available data
200
bam
170
bigWig
158
bed narrowPeak
56
bigBed narrowPeak
49
tagAlign
10
tsv
6
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
3
bedpe bed3+
3
hic
1
hdf5
1
tagAlign bed3+
Organism
261
Homo sapiens
Biosample type
238
tissue
primary cell
15
cell line
8
in vitro differentiated cells
Organ
86
brain
69
limb
42
nerve
26
artery
26
blood vessel
26
vasculature
21
eye
kidney
18
pancreas
8
heart
6
liver
4
connective tissue
4
gonad
4
ovary
2
epithelium
2
pituitary gland
1
adipose tissue
1
lymph node
1
skin of body
Project
261
AMP
Genome assembly (visualization)
177
hg19
171
GRCh38
Lab
261
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
Audit category:
1
inconsistent assembly
month_released!
April, 2020
biosample_type!
primary cell
organ_slims!
kidney
BIOSAMPLE
ASSAY
261 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
pCHi-C
tissue
islet of Langerhans
21
14
13
4
tibial nerve
35
4
1
2
tibial artery
23
1
2
heart
5
2
1
brain
5
1
+ See 77 more…
cell line
Panc1
13
1
1
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
1
1
1
cardiomyocytes (cardiac muscle cell)
1
1
1
adipocyte
2
See all biosamples
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