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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1031
total RNA-seq
669
ChIP-seq
ATAC-seq
178
DNase-seq
171
single cell RNA-seq
87
RNA microarray
27
WGBS
25
pCHi-C
18
snATAC-seq
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1218
Transcription
669
DNA binding
200
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
442
histone modification
441
histone
227
broad histone mark
214
narrow histone mark
135
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
537
February, 2021
223
August, 2017
177
October, 2019
165
August, 2021
163
June, 2019
143
May, 2020
120
July, 2018
115
May, 2019
80
April, 2019
74
October, 2018
71
July, 2019
48
December, 2017
47
September, 2023
40
May, 2021
40
May, 2024
38
March, 2020
28
May, 2022
26
November, 2018
25
February, 2020
20
November, 2019
April, 2020
16
February, 2023
16
November, 2017
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
4
May, 2023
4
November, 2020
3
December, 2019
1
August, 2022
1
March, 2019
1
October, 2017
Available data
1843
bam
1729
bigWig
1075
tsv
776
bed narrowPeak
558
bigBed narrowPeak
348
fastq
tagAlign
211
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
1
bedpe
1
tagAlign bed3+
Organism
2259
Homo sapiens
Biosample type
2260
tissue
788
primary cell
613
cell line
312
in vitro differentiated cells
10
stem cell
Organ
533
connective tissue
474
adipose tissue
427
pancreas
274
heart
270
liver
224
kidney
146
bone element
143
brain
114
limb
95
blood vessel
95
vasculature
66
musculature of body
42
nerve
36
artery
28
eye
24
spleen
18
ureter
5
gonad
5
ovary
4
skeleton
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
pericardium
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2193
AMP
47
KPMP
20
T1D
Genome assembly (visualization)
1585
GRCh38
1528
hg19
Lab
2056
AMP-T2D consortium
67
Katalin Susztak, Upenn
47
KPMP
40
Patrick T. Ellinor, Broad
23
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
Audit category:
90
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
22
missing controlled_by
Audit category:
6
inconsistent control read length
month_released!
April, 2020
files.file_type!
tagAlign
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
2260 results
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total RNA-seq
ChIP-seq
DNase-seq
single cell RNA-seq
RNA microarray
WGBS
pCHi-C
snATAC-seq
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
adipose tissue
382
2
3
1
islet of Langerhans
292
62
1
6
4
7
3
1
1
4
liver
167
75
2
1
3
1
1
1
1
kidney
49
27
13
64
6
1
1
1
bone element
84
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