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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
12
total RNA-seq
10
ChIP-seq
2
ATAC-seq
2
RRBS
2
pCHi-C
Assay category
12
Transcription
10
DNA binding
2
DNA accessibility
2
DNA methylation
Target of assay
6
control
4
histone
4
histone modification
4
narrow histone mark
Date released
12
February, 2020
4
November, 2017
3
May, 2019
3
October, 2019
2
July, 2019
2
March, 2020
1
February, 2023
1
October, 2017
Available data
243
bam
bigWig
203
bed narrowPeak
127
bigBed narrowPeak
tagAlign
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
26
tsv
21
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
28
Homo sapiens
Biosample type
27
tissue
1
primary cell
Organ
318
pancreas
223
kidney
221
epithelium
167
heart
125
liver
101
bone element
93
connective tissue
79
vasculature
78
blood vessel
59
adipose tissue
55
eye
54
artery
31
limb
28
brain
26
musculature of body
16
skeleton
14
blood
14
bodily fluid
12
nerve
9
spleen
8
embryo
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
28
AMP
Genome assembly (visualization)
5
hg19
2
GRCh38
Lab
28
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
month_released!
April, 2020
files.file_type!
tagAlign
bigWig
BIOSAMPLE
ASSAY
28 results
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total RNA-seq
ChIP-seq
ATAC-seq
RRBS
pCHi-C
tissue
brain
1
1
1
Ammon's horn
1
1
cerebellum (Hemisphere)
1
1
layer of hippocampus
2
temporal lobe
2
+ See 16 more…
primary cell
choroid plexus epithelial cell
1
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