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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
331
ATAC-seq
74
snATAC-seq
3
DNase-seq
Assay category
507
Transcription
481
DNA binding
408
DNA accessibility
80
DNA methylation
29
3D chromatin structure
1
DNA sequencing
Date released
102
February, 2023
79
May, 2022
55
May, 2020
48
February, 2021
29
May, 2021
26
November, 2019
19
October, 2019
16
August, 2021
16
January, 2021
11
May, 2023
April, 2020
4
March, 2019
1
August, 2017
1
August, 2022
1
November, 2020
Available data
492
bed narrowPeak
389
bam
bigWig
241
bigBed narrowPeak
209
bed bed3+
208
bed broadPeak
206
bigBed broadPeak
102
fastq
xls
60
zippedFastqFolder
14
tsv
12
bed bed3
7
bed bedgraph
4
txt
1
tar
Organism
408
Homo sapiens
Biosample type
180
primary cell
172
tissue
30
in vitro differentiated cells
26
cell line
Organ
122
pancreas
71
epithelium
43
artery
43
blood vessel
43
heart
43
vasculature
28
eye
19
kidney
16
connective tissue
12
bone element
12
skeleton
8
blood
8
bodily fluid
6
limb
3
liver
2
adipose tissue
2
brain
1
musculature of body
1
pituitary gland
1
skin of body
Project
292
AMP
87
HPAP
29
T1D
Genome assembly (visualization)
138
hg19
119
GRCh38
Lab
253
AMP-T2D consortium
87
Klaus Kaestner, Upenn
47
Kyle Gaulton, UCSD
17
Katalin Susztak, Upenn
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
Audit category:
35
inconsistent ontology term
29
audit script error
1
inconsistent replicate
month_released!
April, 2020
files.file_type!
xls
bigWig
BIOSAMPLE
ASSAY
408 results
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Clear Filters
ATAC-seq
snATAC-seq
DNase-seq
primary cell
Langerhans cell
48
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
pancreatic alpha cell
22
monocyte
13
+ See 13 more…
tissue
islet of Langerhans
65
7
coronary artery
35
kidney
11
6
retina
15
pigmented layer of retina
12
+ See 18 more…
in vitro differentiated cells
neural progenitor cell
10
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
adipocyte
5
chondrocyte
5
immature adipocyte
2
+ See 3 more…
cell line
EndoC_BH1
17
smooth muscle cell of the coronary artery
8
HepG2
1
See all biosamples
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