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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
124
ChIP-seq
96
total RNA-seq
24
ATAC-seq
1
Hi-C
Assay category
124
DNA binding
96
Transcription
24
DNA accessibility
1
3D chromatin structure
Target of assay
119
histone
119
histone modification
64
broad histone mark
55
narrow histone mark
5
RNA binding protein
5
transcription factor
Date released
135
May, 2021
45
May, 2020
40
May, 2024
11
May, 2023
7
August, 2020
3
September, 2020
2
March, 2019
1
March, 2023
1
October, 2017
Available data
231
bigWig
188
bed narrowPeak
180
bam
96
tsv
84
tagAlign
xls
11
fastq
1
bed broadPeak
1
hic
Organism
245
Homo sapiens
Biosample type
191
primary cell
54
tissue
Organ
40
heart
13
pancreas
11
kidney
10
epithelium
Project
180
T1D
54
AMP
10
HPAP
1
ITG
Genome assembly (visualization)
288
hg19
245
GRCh38
Lab
AMP-T2D consortium
180
Kyle Gaulton, UCSD
40
Patrick T. Ellinor, Broad
11
Katalin Susztak, Upenn
10
Klaus Kaestner, Upenn
1
Bing Ren, UCSD
1
ITG
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
month_released!
April, 2020
lab.title!
AMP-T2D consortium
files.file_type!
xls
BIOSAMPLE
ASSAY
245 results
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ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
primary cell
monocyte
84
53
pancreatic alpha cell
7
pancreatic beta cell
3
B cell
2
CD8-positive, alpha-beta T cell
2
+ See 23 more…
tissue
left cardiac atrium
40
kidney
11
islet of Langerhans
3
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