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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
81
total RNA-seq
14
ATAC-seq
2
snATAC-seq
Assay category
81
Transcription
16
DNA accessibility
Date released
235
May, 2021
198
May, 2022
134
August, 2021
97
February, 2023
59
September, 2020
47
September, 2023
45
February, 2021
45
May, 2020
40
May, 2024
April, 2020
16
January, 2021
14
May, 2023
7
August, 2020
5
March, 2019
4
November, 2020
3
March, 2023
3
October, 2022
1
October, 2017
Available data
76
fastq
3
bed bedgraph
3
bigWig
3
txt
2
bed narrowPeak
Organism
97
Homo sapiens
Biosample type
76
primary cell
18
tissue
cell line
3
in vitro differentiated cells
Organ
55
pancreas
37
epithelium
Project
76
HPAP
18
T1D
3
AMP
Genome assembly (visualization)
3
hg19
Lab
AMP-T2D consortium
76
Klaus Kaestner, Upenn
18
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
1
inconsistent ontology term
month_released!
April, 2020
lab.title!
AMP-T2D consortium
biosample_type!
cell line
BIOSAMPLE
ASSAY
97 results
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total RNA-seq
ATAC-seq
snATAC-seq
primary cell
exocrine cell
39
pancreatic alpha cell
27
pancreatic beta cell
10
tissue
islet of Langerhans
5
11
2
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
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