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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
115
ChIP-seq
25
total RNA-seq
5
WGBS
2
DNase-seq
2
RRBS
Assay category
115
DNA binding
25
Transcription
7
DNA methylation
2
DNA accessibility
Target of assay
96
histone
96
histone modification
60
broad histone mark
36
narrow histone mark
19
control
Date released
670
February, 2021
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
176
May, 2022
129
February, 2023
124
August, 2017
120
May, 2019
118
July, 2018
108
July, 2019
82
November, 2017
80
April, 2019
64
March, 2020
61
November, 2019
47
September, 2023
40
May, 2024
25
February, 2020
April, 2020
18
September, 2020
16
January, 2021
16
November, 2020
16
October, 2018
15
May, 2023
10
December, 2019
6
October, 2017
5
April, 2018
5
March, 2023
4
March, 2019
4
October, 2022
3
January, 2018
1
August, 2022
Available data
fastq
282
bam
272
bigWig
142
bed narrowPeak
114
tsv
85
tagAlign
42
bigBed narrowPeak
41
bed broadPeak
33
bed bed3+
15
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
149
Homo sapiens
Biosample type
134
tissue
14
in vitro differentiated cells
1
primary cell
Organ
55
connective tissue
41
adipose tissue
27
liver
26
musculature of body
21
pancreas
12
brain
3
blood vessel
3
heart
3
limb
3
vasculature
2
artery
1
eye
1
nerve
1
spinal cord
Project
149
AMP
Genome assembly (visualization)
21
hg19
Lab
149
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
month_released!
April, 2020
files.file_type!
fastq
BIOSAMPLE
ASSAY
149 results
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Clear Filters
ChIP-seq
total RNA-seq
WGBS
DNase-seq
RRBS
tissue
subcutaneous abdominal adipose tissue
36
3
liver
23
2
skeletal muscle tissue
22
2
islet of Langerhans
20
right lobe of liver
1
1
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in vitro differentiated cells
adipocyte
14
primary cell
skeletal muscle myoblast
1
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