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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
67
ChIP-seq
2
WGBS
1
ATAC-seq
1
DNase-seq
Assay category
67
DNA binding
2
DNA accessibility
2
DNA methylation
Target of assay
34
transcription factor
26
histone
26
histone modification
13
narrow histone mark
12
broad histone mark
7
control
4
RNA binding protein
2
chromatin remodeller
Date released
451
February, 2021
71
August, 2017
23
October, 2018
18
June, 2019
16
July, 2019
6
November, 2020
2
April, 2018
2
July, 2018
1
May, 2021
1
November, 2018
1
November, 2019
1
October, 2017
Available data
72
fastq
71
bam
65
bigWig
46
bed narrowPeak
22
tagAlign
11
bed bed3+
3
bigBed narrowPeak
2
bed bedMethyl
2
bed broadPeak
2
bigBed bedMethyl
1
bigBed broadPeak
Organism
71
Homo sapiens
Biosample type
54
in vitro differentiated cells
17
tissue
Organ
168
pancreas
71
connective tissue
29
epithelium
26
liver
17
adipose tissue
Project
71
AMP
Genome assembly (visualization)
65
GRCh38
63
hg19
Lab
71
AMP-T2D consortium
Audit category:
17
missing controlled_by
Audit category:
6
inconsistent control read length
month_released!
April, 2020
BIOSAMPLE
ASSAY
71 results
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ChIP-seq
WGBS
ATAC-seq
DNase-seq
in vitro differentiated cells
adipocyte
53
1
tissue
white adipose tissue
12
adipose tissue
2
2
subcutaneous adipose tissue
1
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