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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
138
ChIP-seq
5
total RNA-seq
3
ATAC-seq
3
DNase-seq
1
RRBS
Assay category
138
DNA binding
6
DNA accessibility
5
Transcription
1
DNA methylation
Target of assay
76
histone
76
histone modification
39
narrow histone mark
38
transcription factor
36
broad histone mark
24
control
12
RNA binding protein
9
chromatin remodeller
Date released
359
May, 2021
324
November, 2017
170
February, 2021
148
May, 2020
134
May, 2022
127
August, 2017
110
February, 2023
90
August, 2021
73
September, 2018
72
October, 2019
62
November, 2018
59
September, 2020
55
June, 2019
48
July, 2018
46
December, 2017
43
April, 2018
39
February, 2018
31
July, 2019
28
December, 2018
24
March, 2020
23
January, 2019
21
November, 2019
12
November, 2020
8
January, 2021
7
August, 2020
7
December, 2019
6
January, 2018
5
March, 2023
5
May, 2019
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
2
October, 2018
Available data
135
bam
135
fastq
114
bigWig
91
bed narrowPeak
35
bigBed narrowPeak
26
tagAlign
15
bed broadPeak
15
bigBed broadPeak
7
bed bed3+
5
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
150
Homo sapiens
Biosample type
tissue
68
in vitro differentiated cells
59
primary cell
23
cell line
Organ
68
connective tissue
41
pancreas
29
epithelium
18
blood
18
bodily fluid
5
liver
Project
150
AMP
Genome assembly (visualization)
116
hg19
111
GRCh38
Lab
150
AMP-T2D consortium
Audit category:
17
missing controlled_by
Audit category:
11
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
month_released!
April, 2020
biosample_type!
tissue
BIOSAMPLE
ASSAY
150 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
RRBS
in vitro differentiated cells
adipocyte
67
1
primary cell
skeletal muscle myoblast
15
2
1
pancreatic alpha cell
13
1
pancreatic beta cell
13
1
pancreatic endocrine cell
12
pancreatic acinar cell
1
cell line
GM12878
18
HepG2
5
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