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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
15
total RNA-seq
4
DNase-seq
4
pCHi-C
2
ChIP-seq
1
ATAC-seq
1
RRBS
Assay category
15
Transcription
5
DNA accessibility
2
DNA binding
1
DNA methylation
Target of assay
histone
3
histone modification
3
narrow histone mark
1
RNA binding protein
1
control
1
transcription factor
Date released
February, 2023
19
October, 2019
6
June, 2019
1
February, 2020
1
July, 2019
Available data
6
bam
5
bed narrowPeak
5
bigBed narrowPeak
5
bigWig
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
1
tsv
Organism
27
Homo sapiens
Biosample type
23
tissue
4
primary cell
Organ
739
pancreas
689
liver
592
connective tissue
458
adipose tissue
379
epithelium
324
kidney
260
heart
151
bone element
130
vasculature
125
blood vessel
98
brain
86
artery
73
limb
68
blood
68
bodily fluid
63
musculature of body
27
eye
25
embryo
19
nerve
19
spleen
18
ureter
8
skeleton
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
27
AMP
Genome assembly (visualization)
6
hg19
5
GRCh38
Lab
27
AMP-T2D consortium
month_released!
April, 2020
February, 2023
target.investigated_as!
histone
BIOSAMPLE
ASSAY
27 results
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total RNA-seq
DNase-seq
pCHi-C
ChIP-seq
ATAC-seq
RRBS
tissue
islet of Langerhans
14
4
1
retina
1
3
primary cell
retinal pigment epithelial cell
1
2
1
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