Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
393
ChIP-seq
48
total RNA-seq
20
ATAC-seq
6
MeRIP-seq
3
Hi-C
2
Capture-C
2
STARR-seq
2
pCHi-C
1
CRISPR genome editing followed by sgRNA sequencing
1
DNase-seq
1
WGBS
1
whole genome sequencing assay
Assay category
393
DNA binding
48
Transcription
21
DNA accessibility
3
3D chromatin structure
1
DNA methylation
1
DNA sequencing
Target of assay
298
transcription factor
82
recombinant protein
65
control
55
RNA binding protein
30
histone
30
histone modification
20
chromatin remodeller
15
broad histone mark
15
narrow histone mark
3
nucleotide modification
2
other context
2
other post-translational modification
Date released
315
November, 2017
46
November, 2018
33
August, 2021
28
February, 2021
21
May, 2021
16
November, 2019
6
November, 2020
5
January, 2019
5
March, 2020
2
October, 2019
1
December, 2018
1
February, 2023
1
May, 2020
Available data
417
bam
382
bigWig
367
fastq
323
bed narrowPeak
294
bigBed narrowPeak
58
bed broadPeak
58
bigBed broadPeak
50
tsv
12
tagAlign
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bed3+
1
bed bedMethyl
1
bigBed bedMethyl
1
vcf
Organism
479
Homo sapiens
Biosample type
480
cell line
407
primary cell
376
tissue
24
in vitro differentiated cells
Organ
401
liver
92
pancreas
79
epithelium
66
artery
66
blood vessel
66
heart
66
vasculature
61
blood
61
bodily fluid
19
kidney
8
embryo
1
mammary gland
Project
476
AMP
4
T1D
Genome assembly (visualization)
382
hg19
317
GRCh38
Lab
443
AMP-T2D consortium
31
Bing Ren, UCSD
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
76
inconsistent ontology term
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
month_released!
April, 2020
BIOSAMPLE
ASSAY
480 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
MeRIP-seq
Hi-C
Capture-C
STARR-seq
pCHi-C
CRISPR genome editing followed by sgRNA sequencing
DNase-seq
WGBS
whole genome sequencing assay
cell line
HepG2
378
14
1
2
2
2
1
1
EndoC_BH1
15
33
19
6
1
2
1
glomerular visceral epithelial cell
1
1
Download