Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
369
ChIP-seq
14
total RNA-seq
2
Hi-C
2
STARR-seq
2
pCHi-C
1
ATAC-seq
1
WGBS
1
whole genome sequencing assay
Assay category
369
DNA binding
14
Transcription
2
3D chromatin structure
1
DNA accessibility
1
DNA methylation
1
DNA sequencing
Target of assay
297
transcription factor
82
recombinant protein
60
control
54
RNA binding protein
20
chromatin remodeller
18
histone
18
histone modification
broad histone mark
9
narrow histone mark
2
other context
2
other post-translational modification
Date released
307
November, 2017
46
November, 2018
30
August, 2021
5
January, 2019
2
February, 2021
1
December, 2018
1
May, 2020
Available data
359
fastq
358
bam
323
bigWig
300
bed narrowPeak
286
bigBed narrowPeak
50
bed broadPeak
50
bigBed broadPeak
15
tsv
6
tagAlign
3
tar
1
bed bed3
1
bed bed3+
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
1
vcf
Organism
392
Homo sapiens
Biosample type
392
cell line
336
tissue
13
primary cell
8
in vitro differentiated cells
Organ
392
liver
82
pancreas
73
epithelium
66
artery
66
blood vessel
66
heart
66
vasculature
61
blood
61
bodily fluid
19
kidney
8
embryo
1
mammary gland
Project
392
AMP
Genome assembly (visualization)
321
hg19
261
GRCh38
Lab
362
AMP-T2D consortium
30
Bing Ren, UCSD
Audit category:
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
20
inconsistent control read length
8
inconsistent control run_type
month_released!
April, 2020
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
392 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
Hi-C
STARR-seq
pCHi-C
ATAC-seq
WGBS
whole genome sequencing assay
cell line
HepG2
369
14
2
2
2
1
1
1
Download