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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
23
ChIP-seq
17
ATAC-seq
2
DNase-seq
2
pCHi-C
1
RNA microarray
Assay category
Transcription
23
DNA binding
19
DNA accessibility
Target of assay
18
control
5
RNA binding protein
5
transcription factor
Date released
August, 2017
23
October, 2018
8
February, 2021
5
February, 2023
1
August, 2018
1
August, 2021
1
January, 2018
1
June, 2019
1
March, 2020
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
35
bam
26
fastq
18
bed narrowPeak
10
bigWig
8
bigBed narrowPeak
4
bed bed3
2
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
1
bedpe bed3+
1
tsv
Organism
44
Homo sapiens
Biosample type
44
tissue
1
in vitro differentiated cells
Organ
544
liver
368
pancreas
294
epithelium
262
brain
229
kidney
227
heart
169
vasculature
163
blood vessel
115
limb
97
bone element
83
artery
78
connective tissue
69
blood
69
bodily fluid
61
musculature of body
42
eye
38
nerve
33
adipose tissue
25
spleen
23
embryo
22
vein
18
ureter
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
45
AMP
Genome assembly (visualization)
24
hg19
17
GRCh38
Lab
45
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
month_released!
April, 2020
August, 2017
assay_slims!
Transcription
BIOSAMPLE
ASSAY
45 results
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ChIP-seq
ATAC-seq
DNase-seq
pCHi-C
RNA microarray
tissue
omental fat pad
11
1
2
subcutaneous adipose tissue
12
1
adipose tissue
3
1
acetabular part of hip bone
1
adipose tissue(adipose white tissue)
1
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in vitro differentiated cells
white fat cell
1
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