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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
948
total RNA-seq
691
ChIP-seq
258
ATAC-seq
DNase-seq
174
single cell RNA-seq
87
RNA microarray
28
snATAC-seq
25
pCHi-C
18
WGBS
16
Hi-C
16
small RNA-seq
6
RRBS
4
MeRIP-seq
3
FAIRE-seq
3
snDrop-seq
Assay category
1138
Transcription
691
DNA binding
289
DNA accessibility
24
DNA methylation
16
3D chromatin structure
Target of assay
469
histone
469
histone modification
259
narrow histone mark
210
broad histone mark
158
control
66
transcription factor
21
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
August, 2017
238
October, 2019
229
August, 2021
193
May, 2020
120
July, 2018
115
May, 2019
95
February, 2023
82
November, 2017
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
48
December, 2017
47
September, 2023
40
March, 2020
40
May, 2021
40
November, 2019
25
February, 2020
23
October, 2017
19
April, 2020
17
November, 2018
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1561
bam
1378
bigWig
987
tsv
702
bed narrowPeak
363
bigBed narrowPeak
193
fastq
179
tagAlign
157
txt
64
xls
20
bed bedMethyl
20
bigBed bedMethyl
11
bed broadPeak
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
3
bed bed3+
1
bedpe
1
tagAlign bed3+
Organism
2275
Homo sapiens
Biosample type
2277
tissue
1000
primary cell
660
cell line
326
in vitro differentiated cells
10
stem cell
Organ
488
connective tissue
429
adipose tissue
352
pancreas
304
liver
246
heart
238
brain
231
kidney
158
bone element
128
blood vessel
128
vasculature
86
limb
69
artery
53
eye
41
nerve
24
musculature of body
24
spleen
20
lung
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2180
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1485
GRCh38
1415
hg19
Lab
1965
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
4
missing controlled_by
Audit category:
1
inconsistent control read length
month_released!
August, 2017
assay_title!
DNase-seq
BIOSAMPLE
ASSAY
2277 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
RNA microarray
snATAC-seq
pCHi-C
WGBS
Hi-C
small RNA-seq
RRBS
MeRIP-seq
FAIRE-seq
snDrop-seq
tissue
adipose tissue
382
3
1
islet of Langerhans
209
29
68
7
4
3
1
4
liver
167
97
20
1
1
1
1
kidney
49
27
75
64
6
1
1
1
bone element
84
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