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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
731
ChIP-seq
Assay category
1138
Transcription
731
DNA binding
289
DNA accessibility
24
DNA methylation
16
3D chromatin structure
Target of assay
504
histone
504
histone modification
274
narrow histone mark
230
broad histone mark
156
control
71
transcription factor
26
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
195
October, 2019
August, 2017
115
May, 2019
82
November, 2017
80
April, 2019
74
October, 2018
50
May, 2020
48
December, 2017
40
May, 2024
15
October, 2017
10
November, 2018
7
December, 2018
7
January, 2019
6
September, 2017
2
March, 2020
Available data
647
bam
533
bed narrowPeak
532
bigWig
359
bigBed narrowPeak
179
tagAlign
145
fastq
9
bed broadPeak
2
bed bed3+
1
tagAlign bed3+
Organism
731
Homo sapiens
Biosample type
731
tissue
484
cell line
226
primary cell
131
in vitro differentiated cells
3
stem cell
Organ
209
brain
123
heart
107
liver
73
blood vessel
73
vasculature
66
limb
61
pancreas
35
nerve
28
artery
27
kidney
24
connective tissue
23
adipose tissue
20
spleen
7
musculature of body
4
gonad
4
ovary
2
eye
1
lymph node
1
pituitary gland
Project
729
AMP
2
T1D
Genome assembly (visualization)
526
GRCh38
445
hg19
Lab
691
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
27
inconsistent control
2
inconsistent ontology term
Audit category:
4
missing controlled_by
Audit category:
1
inconsistent control read length
month_released!
August, 2017
assay_title!
DNase-seq
BIOSAMPLE
ASSAY
731 results
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Clear Filters
ChIP-seq
tissue
liver
97
left cardiac atrium
40
body of pancreas
35
heart left ventricle
35
tibial nerve
35
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