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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
948
total RNA-seq
731
ChIP-seq
258
ATAC-seq
DNase-seq
single cell RNA-seq
87
RNA microarray
28
snATAC-seq
25
pCHi-C
18
WGBS
16
Hi-C
16
small RNA-seq
6
RRBS
4
MeRIP-seq
3
FAIRE-seq
3
snDrop-seq
Assay category
964
Transcription
731
DNA binding
289
DNA accessibility
24
DNA methylation
16
3D chromatin structure
Target of assay
504
histone
504
histone modification
274
narrow histone mark
230
broad histone mark
158
control
71
transcription factor
26
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
539
February, 2021
August, 2017
238
October, 2019
193
May, 2020
123
August, 2021
120
July, 2018
115
May, 2019
94
February, 2023
82
November, 2017
80
April, 2019
77
July, 2019
74
October, 2018
65
May, 2022
48
December, 2017
40
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
25
February, 2020
23
October, 2017
17
November, 2018
12
May, 2023
10
April, 2020
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
2
December, 2019
2
January, 2018
1
August, 2022
Available data
1561
bam
1418
bigWig
884
tsv
742
bed narrowPeak
363
bigBed narrowPeak
193
fastq
179
tagAlign
144
txt
64
xls
20
bed bedMethyl
20
bigBed bedMethyl
11
bed broadPeak
11
hic
10
bedpe bed3+
5
bed bed3
3
bed bed3+
1
bedpe
1
tagAlign bed3+
Organism
2141
Homo sapiens
Biosample type
2143
tissue
813
primary cell
660
cell line
324
in vitro differentiated cells
10
stem cell
Organ
488
connective tissue
429
adipose tissue
352
pancreas
303
liver
238
brain
193
heart
167
kidney
158
bone element
122
blood vessel
122
vasculature
86
limb
67
artery
53
eye
41
nerve
24
spleen
23
musculature of body
16
skeleton
15
epithelium
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2102
AMP
31
T1D
10
LungMap
Genome assembly (visualization)
1525
GRCh38
1415
hg19
Lab
1858
AMP-T2D consortium
131
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
10
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
27
inconsistent control
4
audit script error
Audit category:
4
missing controlled_by
Audit category:
1
inconsistent control read length
month_released!
August, 2017
assay_title!
DNase-seq
single cell RNA-seq
BIOSAMPLE
ASSAY
2143 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
RNA microarray
snATAC-seq
pCHi-C
WGBS
Hi-C
small RNA-seq
RRBS
MeRIP-seq
FAIRE-seq
snDrop-seq
tissue
adipose tissue
382
3
1
islet of Langerhans
209
29
68
7
4
3
1
4
liver
167
97
20
1
1
1
kidney
49
27
75
6
1
1
1
bone element
84
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