Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
933
total RNA-seq
608
ChIP-seq
219
ATAC-seq
DNase-seq
87
RNA microarray
81
single cell RNA-seq
28
snATAC-seq
22
pCHi-C
15
small RNA-seq
13
Hi-C
10
WGBS
5
RRBS
4
MeRIP-seq
3
FAIRE-seq
3
snDrop-seq
Assay category
1029
Transcription
608
DNA binding
250
DNA accessibility
15
DNA methylation
13
3D chromatin structure
Target of assay
409
histone
409
histone modification
236
narrow histone mark
173
broad histone mark
142
control
59
transcription factor
16
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
August, 2017
230
October, 2019
193
May, 2020
137
August, 2021
120
July, 2018
94
May, 2019
82
November, 2017
74
October, 2018
66
May, 2022
59
February, 2023
57
July, 2019
48
December, 2017
47
September, 2023
40
November, 2019
38
May, 2021
33
March, 2020
23
April, 2019
23
October, 2017
22
February, 2020
19
April, 2020
17
November, 2018
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1456
bam
1288
bigWig
876
tsv
596
bed narrowPeak
302
bigBed narrowPeak
193
fastq
179
tagAlign
157
txt
64
xls
13
bed bedMethyl
13
bigBed bedMethyl
11
bed broadPeak
8
hic
7
bedpe bed3+
6
csv
5
bed bed3
3
bed bed3+
1
bedpe
1
tagAlign bed3+
Organism
2029
Homo sapiens
Biosample type
2031
tissue
990
primary cell
594
cell line
325
in vitro differentiated cells
10
stem cell
Organ
488
connective tissue
429
adipose tissue
352
pancreas
304
liver
heart
238
brain
231
kidney
158
bone element
128
blood vessel
128
vasculature
86
limb
69
artery
53
eye
41
nerve
24
musculature of body
24
spleen
20
lung
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1934
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1361
GRCh38
1327
hg19
Lab
1719
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
4
missing controlled_by
Audit category:
1
inconsistent control read length
month_released!
August, 2017
assay_title!
DNase-seq
organ_slims!
heart
BIOSAMPLE
ASSAY
2031 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
RNA microarray
single cell RNA-seq
snATAC-seq
pCHi-C
small RNA-seq
Hi-C
WGBS
RRBS
MeRIP-seq
FAIRE-seq
snDrop-seq
tissue
adipose tissue
382
3
1
islet of Langerhans
209
29
68
7
4
3
1
4
liver
167
97
20
1
1
1
1
kidney
49
27
75
64
6
1
1
1
bone element
84
+ See 142 more…
See all biosamples
Download