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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
778
total RNA-seq
624
ChIP-seq
238
ATAC-seq
DNase-seq
173
single cell RNA-seq
87
RNA microarray
28
snATAC-seq
24
pCHi-C
17
WGBS
15
Hi-C
13
small RNA-seq
6
RRBS
4
MeRIP-seq
3
FAIRE-seq
3
snDrop-seq
Assay category
964
Transcription
624
DNA binding
269
DNA accessibility
23
DNA methylation
15
3D chromatin structure
Target of assay
467
histone
467
histone modification
243
narrow histone mark
224
broad histone mark
123
control
36
transcription factor
24
RNA binding protein
3
other context
3
other post-translational modification
2
nucleotide modification
Date released
544
February, 2021
232
October, 2019
August, 2017
229
August, 2021
120
July, 2018
115
May, 2019
95
February, 2023
82
November, 2017
80
April, 2019
74
October, 2018
69
July, 2019
47
September, 2023
40
May, 2021
40
May, 2024
40
November, 2019
37
March, 2020
26
May, 2022
24
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
13
November, 2018
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1302
bam
1174
bigWig
833
tsv
650
bed narrowPeak
323
bigBed narrowPeak
157
txt
141
fastq
129
tagAlign
64
xls
20
bed bedMethyl
20
bigBed bedMethyl
11
bed broadPeak
10
hic
9
bedpe bed3+
5
bed bed3
5
csv
3
bed bed3+
1
bedpe
1
tagAlign bed3+
Organism
2011
Homo sapiens
Biosample type
2013
tissue
988
primary cell
311
in vitro differentiated cells
259
cell line
10
stem cell
Organ
488
connective tissue
429
adipose tissue
352
pancreas
liver
286
heart
238
brain
231
kidney
158
bone element
128
blood vessel
128
vasculature
86
limb
69
artery
53
eye
41
nerve
24
musculature of body
24
spleen
20
lung
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1916
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1309
GRCh38
1170
hg19
Lab
1701
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
9
audit script error
Audit category:
4
missing controlled_by
Audit category:
1
inconsistent control read length
month_released!
August, 2017
assay_title!
DNase-seq
organ_slims!
liver
BIOSAMPLE
ASSAY
2013 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
RNA microarray
snATAC-seq
pCHi-C
WGBS
Hi-C
small RNA-seq
RRBS
MeRIP-seq
FAIRE-seq
snDrop-seq
tissue
adipose tissue
382
3
1
islet of Langerhans
209
29
68
7
4
3
1
4
kidney
49
27
75
64
6
1
1
1
bone element
84
heart left ventricle
3
35
2
18
1
4
1
1
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