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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
123
ChIP-seq
93
single cell RNA-seq
39
ATAC-seq
DNase-seq
15
total RNA-seq
8
WGBS
3
Hi-C
3
pCHi-C
1
RRBS
1
small RNA-seq
Assay category
123
DNA binding
109
Transcription
39
DNA accessibility
9
DNA methylation
3
3D chromatin structure
Target of assay
95
histone
95
histone modification
57
broad histone mark
38
narrow histone mark
16
control
12
transcription factor
10
RNA binding protein
Date released
92
August, 2021
57
April, 2019
40
May, 2024
36
February, 2023
21
May, 2019
20
July, 2019
8
October, 2019
7
March, 2020
3
February, 2020
2
May, 2021
Available data
146
bed narrowPeak
130
bigWig
111
tsv
105
bam
61
bigBed narrowPeak
7
bed bedMethyl
7
bigBed bedMethyl
3
bedpe bed3+
3
hic
Organism
286
Homo sapiens
Biosample type
286
tissue
66
cell line
10
primary cell
1
in vitro differentiated cells
Organ
488
connective tissue
429
adipose tissue
352
pancreas
304
liver
286
heart
238
brain
231
kidney
158
bone element
128
blood vessel
128
vasculature
86
limb
69
artery
53
eye
41
nerve
24
musculature of body
24
spleen
20
lung
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
286
AMP
Genome assembly (visualization)
164
GRCh38
88
hg19
Lab
246
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
month_released!
August, 2017
assay_title!
DNase-seq
BIOSAMPLE
ASSAY
286 results
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ChIP-seq
single cell RNA-seq
ATAC-seq
total RNA-seq
WGBS
Hi-C
pCHi-C
RRBS
small RNA-seq
tissue
heart left ventricle
35
18
2
3
4
1
1
1
left cardiac atrium
40
18
coronary artery
5
36
1
heart right ventricle
13
17
1
2
1
1
right cardiac atrium
6
18
1
1
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