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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
241
total RNA-seq
211
ChIP-seq
197
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
47
WGBS
17
DNase-seq
pCHi-C
10
Hi-C
6
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
430
Transcription
271
DNA accessibility
211
DNA binding
54
DNA methylation
10
3D chromatin structure
Target of assay
189
histone
189
histone modification
101
broad histone mark
88
narrow histone mark
19
control
6
RNA binding protein
6
transcription factor
Date released
190
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
August, 2017
59
September, 2020
48
July, 2018
47
February, 2021
43
April, 2018
42
June, 2019
24
July, 2019
23
October, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
539
bigWig
519
bam
351
fastq
264
tsv
240
bed narrowPeak
153
zippedFastqFolder
88
tagAlign
74
bigBed narrowPeak
26
bed bed3+
25
bed broadPeak
25
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
976
Homo sapiens
Biosample type
2169
tissue
976
primary cell
639
cell line
321
in vitro differentiated cells
6
stem cell
Organ
377
epithelium
305
pancreas
37
connective tissue
37
vasculature
kidney
31
blood vessel
22
vein
21
brain
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
pericardium
Project
463
AMP
324
HPAP
188
T1D
1
ITG
Genome assembly (visualization)
555
hg19
466
GRCh38
Lab
428
AMP-T2D consortium
324
Klaus Kaestner, Upenn
223
Kyle Gaulton, UCSD
1
ITG
Audit category:
45
inconsistent ontology term
31
audit script error
Audit category:
32
missing controlled_by
month_released!
August, 2017
assay_title!
pCHi-C
organ_slims!
kidney
BIOSAMPLE
ASSAY
976 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
Hi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
54
85
15
1
Langerhans cell
85
48
pancreatic alpha cell
52
34
12
31
1
pancreatic beta cell
21
22
12
16
1
CD8-positive, alpha-beta T cell
4
33
2
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