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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
935
total RNA-seq
658
ChIP-seq
220
ATAC-seq
174
single cell RNA-seq
171
DNase-seq
87
RNA microarray
28
snATAC-seq
pCHi-C
16
WGBS
16
small RNA-seq
15
Hi-C
6
RRBS
4
MeRIP-seq
3
FAIRE-seq
3
snDrop-seq
Assay category
1125
Transcription
658
DNA binding
422
DNA accessibility
22
DNA methylation
15
3D chromatin structure
Target of assay
450
histone
450
histone modification
256
narrow histone mark
194
broad histone mark
142
control
68
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
August, 2017
223
August, 2021
212
October, 2019
193
May, 2020
160
June, 2019
120
July, 2018
82
November, 2017
80
April, 2019
74
October, 2018
70
July, 2019
66
May, 2022
65
May, 2019
60
February, 2023
48
December, 2017
47
September, 2023
40
May, 2024
40
November, 2019
39
May, 2021
26
November, 2018
23
October, 2017
22
February, 2020
19
April, 2020
18
March, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1650
bam
1524
bigWig
954
tsv
818
bed narrowPeak
477
bigBed narrowPeak
202
fastq
182
bed broadPeak
179
tagAlign
174
bed bed3+
171
bigBed broadPeak
157
txt
64
xls
19
bed bedMethyl
19
bigBed bedMethyl
10
hic
9
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2334
Homo sapiens
Biosample type
2336
tissue
981
primary cell
590
cell line
321
in vitro differentiated cells
6
stem cell
Organ
489
connective tissue
430
adipose tissue
357
pancreas
310
heart
306
liver
299
kidney
263
brain
158
bone element
blood vessel
132
vasculature
122
limb
73
artery
55
musculature of body
52
eye
43
nerve
24
spleen
19
lung
18
ureter
16
skeleton
15
epithelium
4
gonad
4
ovary
2
pituitary gland
1
lymph node
1
pericardium
1
skin of body
1
spinal cord
Project
2240
AMP
47
KPMP
30
T1D
19
LungMap
Genome assembly (visualization)
1596
GRCh38
1505
hg19
Lab
1985
AMP-T2D consortium
142
Katalin Susztak, Upenn
51
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
89
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
4
missing controlled_by
Audit category:
1
inconsistent control read length
month_released!
August, 2017
assay_title!
pCHi-C
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
2336 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
small RNA-seq
Hi-C
RRBS
MeRIP-seq
FAIRE-seq
snDrop-seq
tissue
adipose tissue
382
3
islet of Langerhans
203
29
68
6
7
3
1
4
liver
167
97
20
1
2
1
1
kidney
49
27
75
64
13
6
1
1
1
bone element
84
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