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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
470
total RNA-seq
157
ChIP-seq
93
single cell RNA-seq
52
ATAC-seq
32
DNase-seq
8
WGBS
5
pCHi-C
4
small RNA-seq
3
Hi-C
2
RRBS
1
RNA microarray
Assay category
157
DNA binding
Target of assay
97
histone
97
histone modification
57
broad histone mark
40
narrow histone mark
38
control
22
transcription factor
16
RNA binding protein
Date released
57
April, 2019
August, 2017
40
May, 2024
23
October, 2018
21
May, 2019
6
February, 2021
5
June, 2019
5
October, 2019
Available data
119
bed narrowPeak
119
bigWig
116
bam
69
bigBed narrowPeak
23
fastq
6
tagAlign
Organism
157
Homo sapiens
Biosample type
146
tissue
6
cell line
5
primary cell
Organ
504
liver
218
brain
134
heart
124
pancreas
103
epithelium
102
vasculature
99
blood vessel
66
limb
60
blood
60
bodily fluid
52
kidney
36
connective tissue
35
nerve
34
artery
23
adipose tissue
22
embryo
20
spleen
17
musculature of body
17
vein
5
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
157
AMP
Genome assembly (visualization)
118
GRCh38
79
hg19
Lab
117
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
4
inconsistent ontology term
month_released!
August, 2017
BIOSAMPLE
ASSAY
157 results
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ChIP-seq
tissue
left cardiac atrium
40
heart left ventricle
35
heart
14
heart right ventricle
13
subcutaneous adipose tissue
12
+ See 4 more…
cell line
smooth muscle cell of the coronary artery
6
primary cell
cardiac fibroblast
5
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