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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
543
total RNA-seq
165
ChIP-seq
97
single cell RNA-seq
71
ATAC-seq
35
DNase-seq
8
WGBS
8
pCHi-C
4
Hi-C
4
small RNA-seq
2
Capture-C
2
RRBS
1
RNA microarray
Assay category
165
DNA binding
Target of assay
104
histone
104
histone modification
61
broad histone mark
43
narrow histone mark
39
control
22
transcription factor
16
RNA binding protein
Date released
August, 2017
57
April, 2019
40
May, 2024
23
October, 2018
21
May, 2019
12
June, 2019
6
February, 2021
6
October, 2019
Available data
125
bed narrowPeak
125
bigWig
123
bam
75
bigBed narrowPeak
23
fastq
6
tagAlign
Organism
165
Homo sapiens
Biosample type
147
tissue
12
primary cell
6
cell line
Organ
504
liver
218
brain
134
heart
124
pancreas
103
epithelium
102
vasculature
99
blood vessel
66
limb
60
blood
60
bodily fluid
52
kidney
36
connective tissue
35
nerve
34
artery
23
adipose tissue
22
embryo
20
spleen
17
musculature of body
17
vein
5
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
165
AMP
Genome assembly (visualization)
124
GRCh38
85
hg19
Lab
125
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
11
inconsistent ontology term
month_released!
August, 2017
BIOSAMPLE
ASSAY
165 results
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ChIP-seq
tissue
left cardiac atrium
40
heart left ventricle
35
heart
14
heart right ventricle
13
subcutaneous adipose tissue
12
+ See 5 more…
primary cell
mesenchymal stem cell
7
cardiac fibroblast
5
cell line
smooth muscle cell of the coronary artery
6
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