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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
314
total RNA-seq
149
ATAC-seq
124
ChIP-seq
74
single cell RNA-seq
51
WGBS
11
snATAC-seq
10
MeRIP-seq
9
Hi-C
7
DNase-seq
2
Capture-C
2
RRBS
2
small RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
FAIRE-seq
1
pCHi-C
Assay category
124
DNA binding
Target of assay
85
histone
85
histone modification
46
broad histone mark
39
narrow histone mark
27
control
12
transcription factor
7
RNA binding protein
Date released
August, 2017
51
October, 2018
32
September, 2018
13
November, 2019
13
October, 2019
6
September, 2017
4
May, 2021
3
March, 2020
2
May, 2019
Available data
124
bam
96
bed narrowPeak
96
bigWig
73
fastq
47
bigBed narrowPeak
3
tagAlign
2
bed bed3+
Organism
124
Homo sapiens
Biosample type
61
tissue
32
primary cell
28
cell line
3
in vitro differentiated cells
Organ
504
liver
218
brain
124
pancreas
103
epithelium
102
vasculature
99
blood vessel
94
heart
66
limb
60
blood
60
bodily fluid
52
kidney
36
connective tissue
35
nerve
34
artery
23
adipose tissue
22
embryo
20
spleen
17
musculature of body
17
vein
5
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
120
AMP
4
T1D
Genome assembly (visualization)
98
GRCh38
98
hg19
Lab
124
AMP-T2D consortium
Audit category:
15
inconsistent ontology term
Audit category:
32
missing controlled_by
Audit category:
1
inconsistent control read length
month_released!
August, 2017
BIOSAMPLE
ASSAY
124 results
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Clear Filters
ChIP-seq
tissue
body of pancreas
35
endocrine pancreas
16
islet of Langerhans
8
pancreas
2
primary cell
pancreatic ductal cell
13
pancreatic endocrine cell
11
pancreatic acinar cell
8
cell line
EndoC_BH1
15
Panc1
13
in vitro differentiated cells
pancreatic PP cell
3
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