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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1309
ChIP-seq
1197
total RNA-seq
329
ATAC-seq
178
DNase-seq
176
single cell RNA-seq
87
RNA microarray
40
pCHi-C
28
snATAC-seq
24
Hi-C
19
WGBS
16
small RNA-seq
10
MeRIP-seq
6
RRBS
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
FAIRE-seq
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
178
DNA accessibility
Date released
163
June, 2019
9
November, 2018
6
October, 2019
August, 2017
Available data
178
bam
178
bed narrowPeak
178
bigBed narrowPeak
178
bigWig
177
bed bed3+
177
bed broadPeak
177
bigBed broadPeak
9
fastq
Organism
178
Homo sapiens
Biosample type
176
tissue
primary cell
2
cell line
Organ
69
kidney
36
limb
32
musculature of body
27
brain
27
heart
18
ureter
7
pancreas
5
blood vessel
5
vasculature
4
artery
3
eye
3
liver
2
adipose tissue
2
connective tissue
2
nerve
1
epithelium
1
spleen
Project
178
AMP
Genome assembly (visualization)
178
GRCh38
162
hg19
Lab
178
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
month_released!
August, 2017
biosample_type!
primary cell
BIOSAMPLE
ASSAY
178 results
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DNase-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 39 more…
cell line
Panc1
1
glomerular visceral epithelial cell
1
See all biosamples
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