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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1575
ChIP-seq
1438
total RNA-seq
526
ATAC-seq
369
single cell RNA-seq
207
DNase-seq
87
RNA microarray
84
snATAC-seq
66
WGBS
57
pCHi-C
34
Hi-C
small RNA-seq
15
RRBS
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
81
DNA methylation
Date released
41
May, 2022
27
July, 2019
August, 2017
7
November, 2018
6
February, 2021
Available data
41
zippedFastqFolder
30
bed bedMethyl
30
bigBed bedMethyl
16
bam
15
bigWig
13
fastq
6
tsv
Organism
81
Homo sapiens
Biosample type
56
primary cell
24
tissue
1
cell line
Organ
53
epithelium
53
pancreas
10
heart
4
kidney
3
liver
3
vasculature
2
blood vessel
2
brain
2
musculature of body
2
spleen
1
connective tissue
1
eye
1
limb
1
pericardium
Project
47
HPAP
34
AMP
Genome assembly (visualization)
15
GRCh38
15
hg19
Lab
47
Klaus Kaestner, Upenn
34
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
month_released!
August, 2017
assay_title!
small RNA-seq
BIOSAMPLE
ASSAY
81 results
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WGBS
RRBS
primary cell
pancreatic alpha cell
31
pancreatic beta cell
16
cardiac fibroblast
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
+ See 6 more…
tissue
heart left ventricle
4
1
pancreas
2
1
aorta
2
body of pancreas
2
heart right ventricle
2
+ See 9 more…
cell line
HepG2
1
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