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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1535
ChIP-seq
1444
total RNA-seq
526
ATAC-seq
363
single cell RNA-seq
207
DNase-seq
87
RNA microarray
84
snATAC-seq
66
WGBS
57
pCHi-C
34
Hi-C
18
small RNA-seq
15
RRBS
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
84
DNA accessibility
15
DNA methylation
Date released
27
February, 2021
22
May, 2022
16
January, 2021
15
July, 2019
10
April, 2020
August, 2017
6
August, 2021
2
February, 2023
1
August, 2022
Available data
27
fastq
21
zippedFastqFolder
15
bed bedMethyl
15
bigBed bedMethyl
1
bed bed3+
1
txt
Organism
98
Homo sapiens
Biosample type
65
primary cell
34
tissue
Organ
13
pancreas
10
kidney
10
lung
8
blood
8
bodily fluid
6
epithelium
2
brain
2
heart
2
musculature of body
1
connective tissue
1
eye
1
liver
1
pericardium
1
vasculature
Project
48
HPAP
23
AMP
18
T1D
10
LungMap
Genome assembly (visualization)
16
hg19
Lab
48
Klaus Kaestner, Upenn
18
Kyle Gaulton, UCSD
17
AMP-T2D consortium
10
Xin Sun, UCSD
6
Katalin Susztak, Upenn
Audit category:
29
audit script error
2
inconsistent ontology term
month_released!
August, 2017
BIOSAMPLE
ASSAY
99 results
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snATAC-seq
RRBS
primary cell
Langerhans cell
48
peripheral blood mononuclear cell
8
cardiac fibroblast
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
+ See 6 more…
tissue
lung
10
islet of Langerhans
7
1
kidney
6
1
pancreas
4
1
brain
1
+ See 3 more…
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