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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
151
ATAC-seq
97
total RNA-seq
87
single cell RNA-seq
58
ChIP-seq
56
snATAC-seq
47
WGBS
17
pCHi-C
9
Hi-C
9
RRBS
2
DNase-seq
1
DNAme array
1
FAIRE-seq
Assay category
210
DNA accessibility
184
Transcription
58
DNA binding
57
DNA methylation
9
3D chromatin structure
Target of assay
39
histone
39
histone modification
26
broad histone mark
19
control
13
narrow histone mark
Date released
134
May, 2022
102
May, 2020
88
February, 2023
57
May, 2021
56
September, 2020
46
February, 2021
August, 2017
13
July, 2019
12
October, 2019
8
January, 2021
8
June, 2019
3
November, 2017
3
October, 2022
1
August, 2021
1
March, 2020
1
May, 2019
1
November, 2018
1
September, 2018
Available data
164
fastq
153
zippedFastqFolder
90
bigWig
68
bam
31
bed narrowPeak
18
tsv
9
bed bedMethyl
9
bigBed bedMethyl
7
bed bed3+
5
hic
4
bedpe bed3+
4
hdf5
3
cool
2
bed broadPeak
2
bigBed broadPeak
2
csv
1
bigBed narrowPeak
1
tagAlign
1
tar
Organism
535
Homo sapiens
Biosample type
792
tissue
535
primary cell
198
cell line
110
in vitro differentiated cells
7
stem cell
Organ
169
epithelium
142
pancreas
15
vasculature
13
blood vessel
10
vein
8
blood
8
bodily fluid
8
kidney
7
brain
7
connective tissue
3
heart
3
liver
3
musculature of body
2
eye
1
bone element
1
bone marrow
Project
314
HPAP
197
AMP
24
T1D
Genome assembly (visualization)
581
hg19
GRCh38
Lab
314
Klaus Kaestner, Upenn
162
AMP-T2D consortium
59
Kyle Gaulton, UCSD
Audit category:
31
audit script error
18
inconsistent ontology term
month_released!
August, 2017
assembly!
GRCh38
BIOSAMPLE
ASSAY
535 results
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ATAC-seq
total RNA-seq
single cell RNA-seq
ChIP-seq
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
DNase-seq
DNAme array
FAIRE-seq
primary cell
Langerhans cell
85
48
pancreatic alpha cell
22
42
31
1
pancreatic beta cell
13
11
16
1
exocrine cell
39
CD8-positive, alpha-beta T cell
2
2
33
1
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