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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
314
total RNA-seq
149
ATAC-seq
124
ChIP-seq
74
single cell RNA-seq
51
WGBS
10
MeRIP-seq
10
snATAC-seq
7
DNase-seq
6
Hi-C
2
Capture-C
2
RRBS
2
small RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
FAIRE-seq
1
pCHi-C
Assay category
149
DNA accessibility
Date released
57
May, 2022
20
November, 2019
16
May, 2021
14
September, 2018
11
February, 2023
7
August, 2020
5
October, 2017
5
September, 2017
4
March, 2019
4
March, 2020
August, 2017
3
October, 2019
3
September, 2020
Available data
62
bam
61
bed narrowPeak
53
fastq
39
zippedFastqFolder
38
bigWig
19
bigBed narrowPeak
2
bed broadPeak
2
tsv
Organism
149
Homo sapiens
Biosample type
68
primary cell
62
tissue
19
cell line
Organ
149
pancreas
100
epithelium
75
kidney
47
heart
46
blood vessel
46
vasculature
45
artery
28
eye
24
connective tissue
22
liver
12
bone element
12
skeleton
8
limb
5
adipose tissue
4
brain
1
blood
1
bodily fluid
1
musculature of body
1
nerve
1
pituitary gland
1
skin of body
1
spleen
Project
89
AMP
49
HPAP
11
T1D
Genome assembly (visualization)
68
hg19
56
GRCh38
Lab
66
AMP-T2D consortium
49
Klaus Kaestner, Upenn
29
Kyle Gaulton, UCSD
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
19
inconsistent ontology term
month_released!
August, 2017
audit.ERROR.category!
audit script error
BIOSAMPLE
ASSAY
149 results
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ATAC-seq
primary cell
pancreatic alpha cell
34
pancreatic beta cell
22
pancreatic acinar cell
8
pancreatic ductal cell
4
tissue
islet of Langerhans
58
body of pancreas
4
cell line
EndoC_BH1
19
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