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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
9
ChIP-seq
2
ATAC-seq
Assay category
9
DNA binding
2
DNA accessibility
Target of assay
9
histone
9
histone modification
5
narrow histone mark
4
broad histone mark
Date released
August, 2017
6
November, 2017
4
October, 2017
1
March, 2019
Available data
3110
bam
2897
bigWig
1675
bed narrowPeak
1502
tsv
1044
fastq
1000
bigBed narrowPeak
313
tagAlign
281
bed broadPeak
bigBed broadPeak
239
bed bed3+
155
txt
153
zippedFastqFolder
64
xls
30
bed bedMethyl
30
bigBed bedMethyl
20
bedpe bed3+
19
hic
12
bed bed3
7
bed bedgraph
5
hdf5
4
tar
3
csv
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
11
Homo sapiens
Biosample type
11
tissue
Organ
9
brain
2
pancreas
Project
11
AMP
Genome assembly (visualization)
10
hg19
9
GRCh38
Lab
9
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
2
missing controlled_by
month_released!
August, 2017
audit.ERROR.category!
audit script error
files.file_type!
bigBed broadPeak
BIOSAMPLE
ASSAY
11 results
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ChIP-seq
ATAC-seq
tissue
brain
3
cingulate gyrus
2
islet of Langerhans
2
middle frontal area 46
2
caudate nucleus
1
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