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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
ChIP-seq
Assay category
32
DNA binding
Target of assay
38
histone
38
histone modification
20
broad histone mark
narrow histone mark
12
transcription factor
6
chromatin remodeller
2
RNA binding protein
1
recombinant protein
Date released
August, 2017
17
September, 2018
9
November, 2017
3
November, 2018
3
October, 2017
Available data
32
fastq
31
bam
30
bed narrowPeak
30
bigWig
13
bigBed narrowPeak
3
tagAlign
1
bed broadPeak
Organism
32
Homo sapiens
Biosample type
17
primary cell
12
cell line
3
tissue
Organ
17
pancreas
12
liver
10
epithelium
3
brain
Project
32
AMP
Genome assembly (visualization)
30
hg19
23
GRCh38
Lab
32
AMP-T2D consortium
Audit category:
32
missing controlled_by
Audit category:
6
inconsistent control run_type
5
inconsistent control read length
month_released!
August, 2017
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
32 results
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ChIP-seq
primary cell
pancreatic endocrine cell
7
pancreatic ductal cell
6
pancreatic acinar cell
4
cell line
HepG2
12
tissue
brain
3
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