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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
116
ChIP-seq
Assay category
116
DNA binding
Target of assay
106
histone
106
histone modification
87
narrow histone mark
19
broad histone mark
9
transcription factor
1
control
Date released
40
October, 2019
August, 2017
27
May, 2020
18
November, 2017
15
August, 2021
6
October, 2017
5
February, 2021
5
May, 2021
Available data
2560
bam
2560
bigWig
1368
bed narrowPeak
1215
tsv
921
bigBed narrowPeak
753
fastq
257
bed broadPeak
247
bigBed broadPeak
217
bed bed3+
116
tagAlign
22
hic
21
bedpe bed3+
15
bed bedMethyl
15
bigBed bedMethyl
12
bed bed3
7
bed bedgraph
5
hdf5
4
tar
4
txt
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
Organism
116
Homo sapiens
Biosample type
79
tissue
17
cell line
17
in vitro differentiated cells
3
primary cell
Organ
43
brain
42
liver
5
epithelium
4
artery
4
blood vessel
4
heart
4
vasculature
2
pancreas
1
pituitary gland
Project
116
AMP
T1D
Genome assembly (visualization)
145
GRCh38
116
hg19
Lab
116
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
11
inconsistent control read length
month_released!
August, 2017
award.project!
T1D
BIOSAMPLE
ASSAY
116 results
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ChIP-seq
tissue
liver
27
brain
6
angular gyrus
2
cingulate gyrus
2
middle frontal area 46
2
+ See 39 more…
cell line
HepG2
12
smooth muscle cell of the coronary artery
4
iPSC derived cell line
1
in vitro differentiated cells
neural progenitor cell
12
cardiomyocytes
3
pancreatic PP cell
2
primary cell
hepatocyte
3
See all biosamples
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