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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
454
ChIP-seq
46
total RNA-seq
22
ATAC-seq
5
DNase-seq
4
Hi-C
3
small RNA-seq
2
STARR-seq
2
WGBS
2
pCHi-C
1
RRBS
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
454
DNA binding
50
Transcription
27
DNA accessibility
4
3D chromatin structure
3
DNA methylation
1
DNA sequencing
Target of assay
334
transcription factor
82
recombinant protein
74
control
58
RNA binding protein
43
histone
43
histone modification
23
broad histone mark
23
chromatin remodeller
20
narrow histone mark
2
other context
2
other post-translational modification
Date released
315
November, 2017
May, 2020
63
December, 2017
August, 2017
53
November, 2018
40
May, 2022
35
August, 2021
10
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
3
February, 2021
3
March, 2020
2
June, 2019
1
December, 2018
1
February, 2020
Available data
462
bam
437
fastq
434
bigWig
396
bed narrowPeak
352
bigBed narrowPeak
63
bed broadPeak
63
bigBed broadPeak
30
tsv
16
tagAlign
10
bed bed3+
3
tar
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
543
Homo sapiens
Biosample type
400
cell line
114
tissue
15
in vitro differentiated cells
14
primary cell
Organ
724
pancreas
558
connective tissue
543
liver
491
epithelium
434
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
158
bone element
141
artery
122
limb
70
musculature of body
61
blood
61
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
543
AMP
Genome assembly (visualization)
435
hg19
350
GRCh38
Lab
472
AMP-T2D consortium
40
Karen Mohlke, UNC
31
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
month_released!
August, 2017
May, 2020
award.project!
T1D
BIOSAMPLE
ASSAY
543 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
small RNA-seq
STARR-seq
WGBS
pCHi-C
RRBS
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
378
14
1
2
2
1
1
1
tissue
liver
47
24
20
2
1
1
1
1
right lobe of liver
10
3
1
2
1
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
5
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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