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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
204
DNase-seq
75
ChIP-seq
19
Hi-C
2
ATAC-seq
Assay category
206
DNA accessibility
75
DNA binding
19
3D chromatin structure
Target of assay
47
transcription factor
28
histone
28
histone modification
14
broad histone mark
14
narrow histone mark
7
RNA binding protein
4
chromatin remodeller
1
other context
1
other post-translational modification
Date released
187
June, 2019
70
November, 2017
August, 2017
11
October, 2019
9
November, 2018
8
March, 2020
4
October, 2017
3
October, 2022
2
August, 2021
2
March, 2019
2
November, 2019
1
March, 2023
1
November, 2020
Available data
2873
bam
2686
bigWig
1586
bed narrowPeak
1380
tsv
984
bigBed narrowPeak
984
fastq
287
tagAlign
281
bed broadPeak
270
bigBed broadPeak
222
bed bed3+
158
txt
153
zippedFastqFolder
64
xls
30
bed bedMethyl
30
bigBed bedMethyl
19
hic
16
bedpe bed3+
8
csv
7
bed bed3
5
hdf5
4
tar
3
cool
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
300
Homo sapiens
Biosample type
198
tissue
61
cell line
41
primary cell
in vitro differentiated cells
Organ
79
kidney
65
liver
47
brain
36
limb
35
musculature of body
33
heart
28
epithelium
20
vasculature
18
ureter
16
blood vessel
16
pancreas
8
connective tissue
6
vein
4
artery
4
eye
2
adipose tissue
2
nerve
1
spleen
Project
296
AMP
3
HPAP
1
ITG
Genome assembly (visualization)
275
hg19
264
GRCh38
Lab
291
AMP-T2D consortium
3
Klaus Kaestner, Upenn
2
Bing Ren, UCSD
1
ITG
1
Katalin Susztak, Upenn
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
5
inconsistent ontology term
4
audit script error
Audit category:
2
missing controlled_by
Audit category:
13
inconsistent control read length
month_released!
August, 2017
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
300 results
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DNase-seq
ChIP-seq
Hi-C
ATAC-seq
tissue
heart
18
1
brain
14
3
muscle of arm
17
kidney
13
1
muscle of leg
13
+ See 45 more…
cell line
HepG2
58
1
EndoC_BH1
1
Panc1
1
primary cell
endothelial cell of umbilical vein
2
2
2
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
cardiac fibroblast
3
choroid plexus epithelial cell
1
2
+ See 21 more…
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