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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1364
ChIP-seq
1308
total RNA-seq
484
ATAC-seq
361
single cell RNA-seq
207
DNase-seq
87
RNA microarray
84
snATAC-seq
66
WGBS
52
pCHi-C
30
Hi-C
18
small RNA-seq
15
RRBS
10
MeRIP-seq
5
STARR-seq
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
GRO-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
4
DNA accessibility
Date released
2
July, 2019
August, 2017
1
November, 2018
1
October, 2019
Available data
4
bam
4
bed narrowPeak
4
bigBed narrowPeak
4
bigWig
1
fastq
1
tar
Organism
4
Homo sapiens
Biosample type
3
tissue
1
primary cell
Organ
1
blood vessel
1
brain
1
epithelium
1
kidney
1
pancreas
1
vasculature
1
vein
Project
4
AMP
Genome assembly (visualization)
4
hg19
Lab
4
AMP-T2D consortium
month_released!
August, 2017
April, 2019
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
4 results
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FAIRE-seq
tissue
frontal cortex
1
kidney
1
pancreas
1
primary cell
endothelial cell of umbilical vein
1
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