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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
281
ChIP-seq
Assay category
281
DNA binding
Target of assay
233
histone
233
histone modification
137
narrow histone mark
96
broad histone mark
47
control
1
transcription factor
Date released
84
May, 2021
78
November, 2017
August, 2017
50
May, 2020
49
October, 2019
14
October, 2017
4
August, 2021
2
February, 2021
Available data
2688
bam
2531
bigWig
1453
bed narrowPeak
1312
tsv
978
fastq
901
bigBed narrowPeak
281
tagAlign
264
bed broadPeak
253
bigBed broadPeak
209
bed bed3+
158
txt
153
zippedFastqFolder
64
xls
28
bed bedMethyl
28
bigBed bedMethyl
16
hic
14
bedpe bed3+
8
csv
7
bed bed3
3
cool
3
hdf5
3
tar
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
281
Homo sapiens
Biosample type
179
tissue
88
primary cell
in vitro differentiated cells
14
cell line
Organ
118
brain
66
liver
6
artery
6
blood vessel
6
heart
vasculature
4
epithelium
1
pituitary gland
Project
197
AMP
84
T1D
Genome assembly (visualization)
207
GRCh38
179
hg19
Lab
197
AMP-T2D consortium
84
Kyle Gaulton, UCSD
Audit category:
4
missing controlled_by
Audit category:
11
inconsistent control read length
month_released!
August, 2017
biosample_type!
in vitro differentiated cells
organ_slims!
vasculature
BIOSAMPLE
ASSAY
281 results
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ChIP-seq
tissue
liver
50
substantia nigra
16
caudate nucleus
15
layer of hippocampus
15
brain
14
+ See 39 more…
primary cell
monocyte
84
hepatocyte
4
cell line
HepG2
12
iPSC derived cell line
2
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