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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
524
ChIP-seq
194
total RNA-seq
23
ATAC-seq
7
DNase-seq
4
Hi-C
3
pCHi-C
3
small RNA-seq
2
STARR-seq
2
WGBS
1
RRBS
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
524
DNA binding
198
Transcription
30
DNA accessibility
4
3D chromatin structure
3
DNA methylation
1
DNA sequencing
Target of assay
332
transcription factor
107
control
82
histone
82
histone modification
82
recombinant protein
56
RNA binding protein
50
narrow histone mark
32
broad histone mark
22
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
194
May, 2020
August, 2017
53
November, 2018
49
October, 2019
48
December, 2017
40
May, 2022
35
August, 2021
10
July, 2019
5
December, 2019
5
January, 2019
3
February, 2021
3
March, 2020
2
February, 2020
2
June, 2019
1
December, 2018
Available data
682
bam
621
bigWig
436
bed narrowPeak
422
fastq
364
bigBed narrowPeak
179
tsv
66
tagAlign
65
bed broadPeak
65
bigBed broadPeak
12
bed bed3+
3
tar
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
765
Homo sapiens
Biosample type
401
cell line
350
tissue
in vitro differentiated cells
14
primary cell
Organ
755
pancreas
722
liver
530
connective tissue
471
epithelium
433
adipose tissue
392
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
70
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
8
embryo
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
765
AMP
Genome assembly (visualization)
622
hg19
529
GRCh38
Lab
694
AMP-T2D consortium
40
Karen Mohlke, UNC
31
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
month_released!
August, 2017
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
765 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
pCHi-C
small RNA-seq
STARR-seq
WGBS
RRBS
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
378
14
1
2
2
2
1
1
tissue
liver
97
167
20
2
1
1
1
1
tibial nerve
35
5
1
2
right lobe of liver
10
3
1
2
1
primary cell
hepatocyte
4
5
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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