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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
single cell RNA-seq
18
snATAC-seq
4
ChIP-seq
4
total RNA-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
pCHi-C
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
64
Transcription
18
DNA accessibility
4
DNA binding
Target of assay
4
histone
4
histone modification
4
narrow histone mark
Date released
47
September, 2023
February, 2023
19
April, 2020
8
January, 2021
7
March, 2020
4
March, 2023
2
May, 2021
Available data
6
bam
6
bigWig
4
bed narrowPeak
2
tsv
Organism
82
Homo sapiens
Biosample type
primary cell
79
tissue
6
cell line
2
stem cell
Organ
47
kidney
19
lung
16
pancreas
4
epithelium
1
thymus
Project
AMP
47
KPMP
19
LungMap
17
T1D
4
community
Genome assembly (visualization)
6
GRCh38
6
hg19
Lab
47
KPMP
19
Xin Sun, UCSD
9
Kyle Gaulton, UCSD
8
AMP-T2D consortium
4
Anna Gloyn, Oxford
Audit category:
4
inconsistent ontology term
month_released!
August, 2017
February, 2023
biosample_type!
primary cell
award.project!
AMP
BIOSAMPLE
ASSAY
87 results
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single cell RNA-seq
snATAC-seq
ChIP-seq
total RNA-seq
CRISPR RNA-seq
CRISPRi RNA-seq
pCHi-C
shRNA RNA-seq
siRNA RNA-seq
tissue
kidney
47
lung
9
10
islet of Langerhans
4
2
2
pancreas
4
thymus
1
cell line
EndoC_BH1
2
2
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
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