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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
129
ChIP-seq
92
single cell RNA-seq
68
total RNA-seq
27
DNase-seq
12
ATAC-seq
8
WGBS
3
Hi-C
3
pCHi-C
1
RRBS
1
small RNA-seq
Assay category
161
Transcription
129
DNA binding
39
DNA accessibility
9
DNA methylation
3
3D chromatin structure
Target of assay
95
histone
95
histone modification
57
broad histone mark
38
narrow histone mark
18
control
16
transcription factor
10
RNA binding protein
Date released
92
August, 2021
66
February, 2021
57
April, 2019
40
May, 2024
February, 2023
27
June, 2019
21
May, 2019
20
July, 2019
8
October, 2019
7
March, 2020
3
February, 2020
3
May, 2021
Available data
214
bigWig
199
bam
164
tsv
150
bed narrowPeak
88
bigBed narrowPeak
27
bed bed3+
27
bed broadPeak
27
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
6
tagAlign
3
bedpe bed3+
3
hic
Organism
344
Homo sapiens
Biosample type
277
tissue
66
cell line
primary cell
1
in vitro differentiated cells
Organ
723
liver
506
connective tissue
434
pancreas
431
adipose tissue
344
heart
318
kidney
264
brain
164
blood vessel
164
vasculature
150
bone element
122
limb
104
artery
103
epithelium
61
blood
61
bodily fluid
56
musculature of body
43
nerve
37
embryo
25
eye
25
spleen
20
lung
18
ureter
8
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
344
AMP
Genome assembly (visualization)
221
GRCh38
178
hg19
Lab
304
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
month_released!
August, 2017
February, 2023
biosample_type!
primary cell
BIOSAMPLE
ASSAY
344 results
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ChIP-seq
single cell RNA-seq
total RNA-seq
DNase-seq
ATAC-seq
WGBS
Hi-C
pCHi-C
RRBS
small RNA-seq
tissue
heart left ventricle
35
18
3
3
2
4
1
1
1
left cardiac atrium
40
18
1
heart
14
4
18
1
1
1
heart right ventricle
13
17
1
1
2
1
1
right cardiac atrium
6
18
1
1
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cell line
smooth muscle cell of the coronary artery
6
52
8
in vitro differentiated cells
cardiac fibroblast
1
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