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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
54
total RNA-seq
45
ATAC-seq
29
ChIP-seq
4
DNase-seq
2
single cell RNA-seq
Assay category
56
Transcription
49
DNA accessibility
29
DNA binding
Target of assay
18
histone
18
histone modification
14
broad histone mark
7
control
4
narrow histone mark
4
transcription factor
Date released
66
February, 2021
35
February, 2023
26
October, 2019
May, 2019
2
August, 2021
2
February, 2020
2
June, 2019
1
July, 2019
Available data
95
bam
80
bigWig
71
bed narrowPeak
56
tsv
22
bigBed narrowPeak
6
tagAlign
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
Organism
134
Homo sapiens
Biosample type
68
tissue
66
cell line
primary cell
Organ
723
liver
520
connective tissue
451
pancreas
432
adipose tissue
359
heart
318
kidney
237
brain
158
bone element
149
blood vessel
149
vasculature
134
artery
118
epithelium
115
limb
61
blood
61
bodily fluid
56
eye
49
musculature of body
43
nerve
37
embryo
25
spleen
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
134
AMP
Genome assembly (visualization)
123
GRCh38
88
hg19
Lab
134
AMP-T2D consortium
month_released!
August, 2017
May, 2019
biosample_type!
primary cell
BIOSAMPLE
ASSAY
134 results
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total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
single cell RNA-seq
tissue
coronary artery
1
36
2
tibial artery
1
1
23
2
pulmonary artery
2
cell line
smooth muscle cell of the coronary artery
52
8
6
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